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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015802362.1_cds_XP_016478963.1_7014
CDS Infomation

[gene=LOC107800317] [db_xref=GeneID:107800317] [protein=linoleate 13S-lipoxygenase 2-1, chloroplastic-like] [protein_id=XP_016478963.1] [location=join(4282..4636,5956..6224,8720..8957,9900..10220,10976..11061,12106..12216,12700..13001,13130..13396,13601..13941,15119..15537)] [gbkey=CDS]
Sequence

ATGTTGAAGCCTCAGCTTCATCAAACATCACAACCTACAAAAACCCTAATCCCATGGAGT
ACTACTAATTCATTCACTTCAGGAGAAATCTTAGCCTCTTTTCCTATCAATATTTTAAGT
AAAAACCTTAGACAAAAGCACAAGAAGAAGAATTTTAGGGTTCATTATTATGCTGCAAAT
AACACTAAAGCAGTGCTTACTTCTACTGAGAAATCAAGTGGTGTAAAAGCAGTGGTGACT
GTACAAAAAACAGTTGAAGGTACTAACTTAGGTTTATCAAGAGGGCTTGATGATATTGGT
GATTTGCTTGGTAAAACTCTCGTTTTGTGGATTGTTGCTGCTGAGCTTGATCCTAAAACT
GGAATAGAGAAACCCAGCATTAAGACGTTTGCACATCGTGGACGAGATGTGGATGGTGAC
ACACATTATGAGGCTGATTTTGTAATTCCTGAAGCCTTTGGGGAGGTTGGAGCAATTTTA
GTAGAAAATGAGCACCACAAGGAAATGTATGTCAAGAATATAGTAATTGATGGCTTCCCC
CATGGCATGGTTCATATTACTTGCAATTCTTGGGTTCACTCCAAATTTGATAATCCTGAG
AAAAGGATTTTCTTCACCAACAAGTCATATCTACCATCTCAAACACCAAGTGCAATTAAG
AGATTAAGAGAAAGAGAACTTGTAATAATGAGAGGTGATGGATTTGGAGAACGTAAACAA
TTCGAGAGAGTATATGATTATGATGTATACAATGATATTGGAGATCCTGATGCTAGTGAT
GATGCTAAAAGACGGGTAATAGGTGGCAAAGAATTACCTTATCCTAGAAGATGCAGAACT
GGTCGCCCAAGGAGCAAGAAAGATCCATTATCTGAATCAAGGAGTGCCTTTGTATATGTA
CCAAGAGATGAAGCATTCTCAGAAGTGAAGAGCTTAACATTCTCAGGCAACACACTTTAC
TCCGTTCTGCACGCGGTGGTACCGGCGTTGGAGTCCGTCGCCATCGATCCGGACGTCGGA
TTTCCACATTTTCCGGCCATTGACTCACTGTTCAACGTCGGAGTCAGACTTCCACCCCTT
AACGATAAAAGTACCATGTTGAATATCATACCAAGGCTCATTAAGGCCATTTCTGATACC
CAAAAAGATGTCTTGCTCTTTGAAACCCCTGAATTGCTTCAAAGGGACAAATTTTCTTGG
TTTAATGATGTGGAGTTTGCTCGTCAAACCTTAGCTGGTCTCAACCCGTGCAGTATACGC
TTGGTTACGGAATGGCCATTGAAGAGCAAGTTAGACCCTGAGATCTATGGACCTCCTGAA
TCAGCAATCACAAAAGAGCTAATTGAACAAGAAATTGGAGGACTCATGACTGTTGAAGAG
GCAGTTGAACAAAAGAAGCTGTTTATCCTAGATTATCATGATTTGCTGTTACCATATGTT
AACAAAGTGAATGAACTCAAAGGAAGAGTGGTATATGGATCAAGAACTCTATTTTTCTTG
ACACCAGATGGCACATTGAGACCTTTGGCCATTGAGTTAACAAGGCCACCAGTATATGAT
AAACCTCAATGGAAACAAGTATATTGCCCTACTTGGCATGCCACTGGTTCTTGGCTTTGG
AAATTAGCTAAAGCTCATGTTCTTGCTCAAGACTCTGGCTATCACCAGCTGGTTAGTCAC
TGGCTAAGAACTCATTGTGCTACAGAGCCATACATCATAGCAACAAATAGGCAACTTAGC
GCAATGCACCCGATATACAGATTACTGCATCCTCATTTCAGATACACAATGGAAATAAAT
GCCTTAGCTAGAGAAGCTCTTATTAATGCCAATGGAATTATTGAGAGTTCATTTTTCCCT
GGCAAATACGCCGTGGAGTTAAGCTCTGTTGCTTATGGTCTTGAATGGCGATTTGACCGA
CAGGCACTCCCAGAAGACCTCATTAGCAGGGGAATGGCTGTGAAAGATTCAGATGCACCA
TATGGTTTGAAACTAACAATAGAAGACTACCCTTTTGCAAATGATGGTTTAGTACTATGG
GATACCCTTAAACAATGGGTAACAGACTATGTCAACCATTACTATACAGAAACCGAACTC
ATAGAATCCGATACAGAACTCCAAACTTGGTGGACAGAGATAAAAGATGTTGGACATGGT
GACAAGAAAGACGAGCCGTGGTGGCCAGAACTAAACACCCCAGATGACTTAATTGGAATT
ATCACAACAATAATTTGGGTAACTTCTGGACACCATGCAGCAGTAAACTTTGGCCAATAC
AGCTATGCAGGCTACTTTCCAAATAGGCCAACAACTGCTAGAGCAAAAATGCCAACTGAG
GATCCAACTGATGAAGAATGGGAGAGTTTCTTGAAAAGACCAGGGGATGCACTATTAAAA
TGCTTCCCATCACAAATGCAGGCAACAAAAGTCATGGCAATTTTGGATGTTTTATCTAAT
CATTCTCCAGATGAAGAATATCTTGGAGAAAAAATAGAACCTTACTGGGCTGAGAATCCT
GTGATTAATGCGGCGTTCGAAATTTTTTCTGGAAGATTGAAAGAGCTTGAAGGGATTATT
GATGGTAGAAATGCTGATAGCAATTTGATGAACAGAAATGGAGCTGGAGTTATGCCTTAT
GAACTGTTGAAACCATTTTCTGGACCTGGTGTTACTGGAAAAGGTGTTCCTTATAGCATT
TCCATTTGA

Peptide Sequence

PEP ID

XP_016478963.1
PEP Infomation

PREDICTED: linoleate 13S-lipoxygenase 2-1, chloroplastic-like [Nicotiana tabacum]
Sequence

MLKPQLHQTSQPTKTLIPWSTTNSFTSGEILASFPINILSKNLRQKHKKKNFRVHYYAAN
NTKAVLTSTEKSSGVKAVVTVQKTVEGTNLGLSRGLDDIGDLLGKTLVLWIVAAELDPKT
GIEKPSIKTFAHRGRDVDGDTHYEADFVIPEAFGEVGAILVENEHHKEMYVKNIVIDGFP
HGMVHITCNSWVHSKFDNPEKRIFFTNKSYLPSQTPSAIKRLRERELVIMRGDGFGERKQ
FERVYDYDVYNDIGDPDASDDAKRRVIGGKELPYPRRCRTGRPRSKKDPLSESRSAFVYV
PRDEAFSEVKSLTFSGNTLYSVLHAVVPALESVAIDPDVGFPHFPAIDSLFNVGVRLPPL
NDKSTMLNIIPRLIKAISDTQKDVLLFETPELLQRDKFSWFNDVEFARQTLAGLNPCSIR
LVTEWPLKSKLDPEIYGPPESAITKELIEQEIGGLMTVEEAVEQKKLFILDYHDLLLPYV
NKVNELKGRVVYGSRTLFFLTPDGTLRPLAIELTRPPVYDKPQWKQVYCPTWHATGSWLW
KLAKAHVLAQDSGYHQLVSHWLRTHCATEPYIIATNRQLSAMHPIYRLLHPHFRYTMEIN
ALAREALINANGIIESSFFPGKYAVELSSVAYGLEWRFDRQALPEDLISRGMAVKDSDAP
YGLKLTIEDYPFANDGLVLWDTLKQWVTDYVNHYYTETELIESDTELQTWWTEIKDVGHG
DKKDEPWWPELNTPDDLIGIITTIIWVTSGHHAAVNFGQYSYAGYFPNRPTTARAKMPTE
DPTDEEWESFLKRPGDALLKCFPSQMQATKVMAILDVLSNHSPDEEYLGEKIEPYWAENP
VINAAFEIFSGRLKELEGIIDGRNADSNLMNRNGAGVMPYELLKPFSGPGVTGKGVPYSI
SI

Transcript Sequence

Gene sequence data has not been registered.